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Systematic Biology|July 22, 2026
The Y Chromosome is a Reliable Marker for Deep-Time Phylogenetic InferenceEmmarie P Alexander, Nicole M Foley, William J Murphy
Molecular Biology and Evolution|June 29, 2026
Phylogenomic blind spots: The limits of UCE and BUSCO loci in the presence of gene flowNicole M Foley, William J Murphy
Trends in Ecology & Evolution|July 18, 2025
Recombination-aware phylogenomicsFrank T Burbrink, Dylan DeBaun, Nicole M Foley, et al.
The Journal of Heredity|November 12, 2025
A Chromosome-Level Genome Assembly of the Texas Ocelot (Leopardus pardalis albescens)Nicole M Foley, Emma Brookover, Michael E Tewes, et al.
Molecular Biology and Evolution|June 14, 2022
Tree House Explorer: A Novel Genome Browser for PhylogenomicsAndrew J Harris, Nicole M Foley, Tiffani L Williams, et al.
Biorxiv : the Preprint Server for Biology|April 10, 2026
Comparative Genomics Reveals the Ancestral Recombination Landscape of Placental MammalsIsabella R Childers, Nicole M Foley, Kevin R Bredemeyer, et al.
Frontiers in Genetics|December 19, 2019
Evolutionary Models for the Diversification of Placental Mammals Across the KPg BoundaryMark S Springer, Nicole M Foley, Peggy L Brady, et al.
Annual Review of Animal Biosciences|November 24, 2020
Phylogenomics and the Genetic Architecture of the Placental Mammal RadiationWilliam J Murphy, Nicole M Foley, Kevin R Bredemeyer, et al.
The Journal of Heredity|March 8, 2026
A de Novo Genome Assembly of an Angelman Syndrome Pig (sus Scrofa Domesticus) Model to Resolve SNHG14Alasdair J Taylor, Nicole M Foley, Isabella R Childers, et al.
Peerj|July 29, 2024
Worse than nothing at all: the inequality of fusions joining autosomes to the PAR and non-PAR portions of sex chromosomesKayla T Wilhoit, Emmarie P Alexander, Heath Blackmon
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