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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 28, 2020
Metric Labeling and Semimetric Embedding for Protein Annotation PredictionEmre Sefer, Carl KingsfordAlgorithms for Molecular Biology : AMB|March 15, 2019
Semi-nonparametric modeling of topological domain formation from epigenetic dataEmre Sefer, Carl KingsfordKnowledge and Information Systems|November 9, 2016
Diffusion archeology for diffusion progression history reconstructionEmre Sefer, Carl KingsfordJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 9, 2016
Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell SubpopulationsEmre Sefer, Geet Duggal, Carl KingsfordAlgorithms for Molecular Biology : AMB|September 21, 2012
Parsimonious reconstruction of network evolutionRob Patro, Emre Sefer, Justin Malin, et al.Algorithms for Molecular Biology : AMB|March 19, 2013
Resolving spatial inconsistencies in chromosome conformation measurementsGeet Duggal, Rob Patro, Emre Sefer, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 6, 2024
DRGAT: Predicting Drug Responses Via Diffusion-Based Graph Attention NetworkEmre SeferIEEE/ACM Transactions on Computational Biology and Bioinformatics|April 5, 2022
Biocode: A Data-Driven Procedure to Learn the Growth of Biological NetworksEmre SeferBMC Bioinformatics|April 13, 2022
A comparison of topologically associating domain callers over mammals at high resolutionEmre SeferBMC Genomics|April 10, 2022
ProbC: joint modeling of epigenome and transcriptome effects in 3D genomeEmre SeferPageof 11