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Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|November 13, 2009
Exploring biological network dynamics with ensembles of graph partitionsSaket Navlakha, Carl KingsfordMethods in Molecular Biology (Clifton, N.J.)|June 3, 2018
Accurate Assembly and Typing of HLA using a Graph-Guided Assembler KouramiHeewook Lee, Carl KingsfordBioinformatics (Oxford, England)|February 5, 2015
Reference-based compression of short-read sequences using path encodingCarl Kingsford, Rob PatroBiorxiv : the Preprint Server for Biology|February 23, 2026
seq2ribo: Structure-aware integration of machine learning and simulation to predict ribosome location profiles from RNA sequencesGün Kaynar, Carl KingsfordNature Biotechnology|February 9, 2016
Fast search of thousands of short-read sequencing experimentsBrad Solomon, Carl KingsfordJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 12, 2018
Improved Search of Large Transcriptomic Sequencing Databases Using Split Sequence Bloom TreesBrad Solomon, Carl KingsfordIEEE/ACM Transactions on Computational Biology and Bioinformatics|July 11, 2018
Theory and A Heuristic for the Minimum Path Flow Decomposition ProblemMingfu Shao, Carl KingsfordBMC Bioinformatics|September 25, 2012
Graph rigidity reveals well-constrained regions of chromosome conformation embeddingsGeet Duggal, Carl KingsfordBioinformatics (Oxford, England)|January 11, 2011
A fast, lock-free approach for efficient parallel counting of occurrences of k-mersGuillaume Marçais, Carl KingsfordBioinformatics (Oxford, England)|July 2, 2013
Predicting protein interactions via parsimonious network history inferenceRob Patro, Carl KingsfordPageof 11