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Nature Biotechnology|September 10, 2008
What are decision trees?Carl Kingsford, Steven L Salzberg
Bioinformatics (Oxford, England)|July 12, 2021
Practical selection of representative sets of RNA-seq samples using a hierarchical approachLaura H Tung, Carl Kingsford
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 10, 2011
Extracting between-pathway models from E-MAP interactions using expected graph compressionDavid R Kelley, Carl Kingsford
BMC Bioinformatics|July 10, 2026
Enhancing tumor T cell antigen prediction by integrating deep protein representationsUmut Oskay, Baris Tudes, Emre Sefer
Algorithms for Molecular Biology : AMB|May 11, 2021
Exact transcript quantification over splice graphsCong Ma, Hongyu Zheng, Carl Kingsford
Bioinformatics (Oxford, England)|July 12, 2021
Sequence-specific minimizers via polar setsHongyu Zheng, Carl Kingsford, Guillaume Marçais
BMC Bioinformatics|October 30, 2012
Coral: an integrated suite of visualizations for comparing clusteringsDarya Filippova, Aashish Gadani, Carl Kingsford
Bioinformatics (Oxford, England)|July 14, 2020
Improved design and analysis of practical minimizersHongyu Zheng, Carl Kingsford, Guillaume Marçais
Arxiv|November 21, 2023
Sketching methods with small window guarantee using minimum decycling setsGuillaume Marçais, Dan DeBlasio, Carl Kingsford
Bioinformatics (Oxford, England)|May 7, 2016
Isoform-level ribosome occupancy estimation guided by transcript abundance with RibomapHao Wang, Joel McManus, Carl Kingsford
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