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Algorithms for Molecular Biology : AMB|June 4, 2020
Context-aware seeds for read mappingHongyi Xin, Mingfu Shao, Carl KingsfordJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 18, 2022
Deriving Ranges of Optimal Estimated Transcript Expression due to NonidentifiabilityHongyu Zheng, Cong Ma, Carl KingsfordJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 12, 2022
Differentiable Learning of Sequence-Specific Minimizer Schemes with DeepMinimizerMinh Hoang, Hongyu Zheng, Carl KingsfordGenome Biology|April 14, 2018
SQUID: transcriptomic structural variation detection from RNA-seqCong Ma, Mingfu Shao, Carl KingsfordBioinformatics (Oxford, England)|June 29, 2018
Asymptotically optimal minimizers schemesGuillaume Marçais, Dan DeBlasio, Carl KingsfordNucleic Acids Research|October 4, 2013
Higher-order chromatin domains link eQTLs with the expression of far-away genesGeet Duggal, Hao Wang, Carl KingsfordJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 12, 2016
Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in YeastHao Wang, Joel McManus, Carl KingsfordJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|July 9, 2024
Sketching Methods with Small Window Guarantee Using Minimum Decycling SetsGuillaume Marçais, Dan DeBlasio, Carl KingsfordJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|November 17, 2023
Density and Conservation Optimization of the Generalized Masked-Minimizer Sketching SchemeMinh Hoang, Guillaume Marçais, Carl KingsfordArxiv|June 9, 2023
Revisiting the Complexity of and Algorithms for the Graph Traversal Edit Distance and Its VariantsYutong Qiu, Yihang Shen, Carl KingsfordPageof 11