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Biorxiv : the Preprint Server for Biology|November 18, 2024
Data-driven AI system for learning how to run transcript assemblersYihang Shen, Zhiwen Yan, Carl KingsfordCell Systems|July 26, 2016
Tradeoffs between Dense and Replicate Sampling Strategies for High-Throughput Time Series ExperimentsEmre Sefer, Michael Kleyman, Ziv Bar-JosephPlos One|July 29, 2009
2009 Swine-origin influenza A (H1N1) resembles previous influenza isolatesCarl Kingsford, Niranjan Nagarajan, Steven L SalzbergBMC Bioinformatics|January 13, 2010
Assembly complexity of prokaryotic genomes using short readsCarl Kingsford, Michael C Schatz, Mihai PopJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 3, 2009
Revealing biological modules via graph summarizationSaket Navlakha, Michael C Schatz, Carl KingsfordGenome Biology|December 19, 2019
Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long readsLaura H Tung, Mingfu Shao, Carl KingsfordBioinformatics (Oxford, England)|October 21, 2024
k-nonical space: sketching with reverse complementsGuillaume Marçais, C S Elder, Carl KingsfordNature Biotechnology|April 23, 2014
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithmsRob Patro, Stephen M Mount, Carl KingsfordMethods (San Diego, Calif.)|January 14, 2018
Using the Ribodeblur pipeline to recover A-sites from yeast ribosome profiling dataHao Wang, Carl Kingsford, C Joel McManusArxiv|August 13, 2025
CodonMoE: DNA Language Models for mRNA AnalysesShiyi Du, Litian Liang, Jiayi Li, et al.Pageof 11