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Biology Direct|August 22, 2016
Unity and disunity in evolutionary sciences: process-based analogies open common research avenues for biology and linguisticsJohann-Mattis List, Jananan Sylvestre Pathmanathan, Philippe Lopez, et al.
Proceedings of the National Academy of Sciences of the United States of America|March 16, 2016
Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosisRaphaël Méheust, Ehud Zelzion, Debashish Bhattacharya, et al.
Molecular Biology and Evolution|November 2, 2017
CompositeSearch: A Generalized Network Approach for Composite Gene Families DetectionJananan Sylvestre Pathmanathan, Philippe Lopez, François-Joseph Lapointe, et al.
Microbiology Spectrum|April 14, 2018
Tracking the Rules of Transmission and Introgression with NetworksChloé Vigliotti, Cédric Bicep, Eric Bapteste, et al.
Genome Biology and Evolution|June 30, 2011
Evaluating phylogenetic congruence in the post-genomic eraJessica W Leigh, François-Joseph Lapointe, Philippe Lopez, et al.
Biology Direct|August 25, 2011
The Public Goods Hypothesis for the evolution of life on EarthJames O McInerney, Davide Pisani, Eric Bapteste, et al.
Proceedings of the National Academy of Sciences of the United States of America|April 12, 2013
Gene similarity networks provide tools for understanding eukaryote origins and evolutionDavid Alvarez-Ponce, Philippe Lopez, Eric Bapteste, et al.
Genome Biology and Evolution|June 14, 2020
Gene Similarity Networks Unveil a Potential Novel Unicellular Group Closely Related to Animals from the Tara Oceans ExpeditionAlicia S Arroyo, Romain Iannes, Eric Bapteste, et al.
Methods in Molecular Biology (Clifton, N.J.)|April 29, 2026
PhyloSystemX: Enhancing the Analysis of Interaction NetworksHugo Bonnefous, Yu Zhang, Philippe Lopez, et al.
Geroscience|June 11, 2024
Most genetic roots of fungal and animal aging are hundreds of millions of years old according to phylostratigraphy analyses of aging networksHugo Bonnefous, Jérôme Teulière, François-Joseph Lapointe, et al.
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