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Cell|March 24, 2009
Polycomb proteins remain bound to chromatin and DNA during DNA replication in vitroNicole J Francis, Nicole E Follmer, Matthew D Simon, et al.Cell Reports|April 20, 2022
Functional elements of the cis-regulatory lincRNA-p21Lauren Winkler, Maria Jimenez, Joshua T Zimmer, et al.Chemistry & Biology|July 24, 2004
Dissecting the Engrailed homeodomain-DNA interaction by phage-displayed shotgun scanningKen Sato, Matthew D Simon, Aron M Levin, et al.Biorxiv : the Preprint Server for Biology|March 10, 2025
Novel environment exposure drives temporally defined and region-specific chromatin accessibility and gene expression changes in the hippocampusLisa Traunmüller, Erin E Duffy, Hanqing Liu, et al.Molecular Cell|September 14, 2021
STL-seq reveals pause-release and termination kinetics for promoter-proximal paused RNA polymerase II transcriptsJoshua T Zimmer, Nicolle A Rosa-Mercado, Daniele Canzio, et al.Cell Chemical Biology|December 28, 2020
Discovery of cellular substrates of human RNA-decapping enzyme DCP2 using a stapled bicyclic peptide inhibitorYang Luo, Jeremy A Schofield, Zhenkun Na, et al.Nature Communications|August 21, 2025
Novel environment exposure drives temporally defined and region-specific chromatin accessibility and gene expression changes in the hippocampusLisa Traunmüller, Erin E Duffy, Hanqing Liu, et al.Biorxiv : the Preprint Server for Biology|October 28, 2024
Expanding and improving analyses of nucleotide recoding RNA-seq experiments with the EZbakR suiteIsaac W Vock, Justin W Mabin, Martin Machyna, et al.Plos Computational Biology|July 3, 2025
Expanding and improving analyses of nucleotide recoding RNA-seq experiments with the EZbakR suiteIsaac W Vock, Justin W Mabin, Martin Machyna, et al.Nature Structural & Molecular Biology|September 17, 2008
The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structureXu Lu, Matthew D Simon, Jayanth V Chodaparambil, et al.Pageof 9