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Elife|August 31, 2021
Sterically confined rearrangements of SARS-CoV-2 Spike protein control cell invasionEsteban Dodero-Rojas, Jose N Onuchic, Paul Charles Whitford
Plos Computational Biology|December 3, 2025
Epigenetics is all you need: A transformer to decode chromatin structural compartments from the epigenomeEsteban Dodero-Rojas, Angel Mendieta, Yao Fehlis, et al.
Plos One|January 29, 2020
Modeling Chikungunya control strategies and Mayaro potential outbreak in the city of Rio de JaneiroEsteban Dodero-Rojas, Luiza G Ferreira, Vitor B P Leite, et al.
Nucleic Acids Research|September 23, 2025
Comprehensive profiling of activity and specificity of RNA-guided transposons reveals opportunities to engineer improved variantsSeong Guk Park, Jung-Un Park, Esteban Dodero-Rojas, et al.
Journal of Molecular Biology|June 11, 2023
PyMEGABASE: Predicting Cell-Type-Specific Structural Annotations of Chromosomes Using the EpigenomeEsteban Dodero-Rojas, Matheus F Mello, Sumitabha Brahmachari, et al.
Proceedings of the National Academy of Sciences of the United States of America|January 23, 2026
A data-driven chromatin model reveals spatial and dynamic features of genome organizationAntonio B Oliveira Junior, Matheus F Mello, Ronaldo J Oliveira, et al.
Nucleic Acids Research|October 6, 2020
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genomeVinícius G Contessoto, Ryan R Cheng, Arya Hajitaheri, et al.
Protein Science : a Publication of the Protein Society|October 16, 2021
SMOG 2 and OpenSMOG: Extending the limits of structure-based modelsAntonio B de Oliveira, Vinícius G Contessoto, Asem Hassan, et al.
Science (New York, N.Y.)|August 15, 2024
Structure and inhibition of SARS-CoV-2 spike refolding in membranesMichael W Grunst, Zhuan Qin, Esteban Dodero-Rojas, et al.
Biorxiv : the Preprint Server for Biology|October 22, 2021
Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation ToolsChristopher Markosian, Daniela I Staquicini, Prashant Dogra, et al.
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