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Protein Science : a Publication of the Protein Society|June 26, 2007
Nonbonded terms extrapolated from nonlocal knowledge-based energy functions improve error detection in near-native protein structure modelsEvandro Ferrada, Francisco MeloProtein Science : a Publication of the Protein Society|June 17, 2009
Effective knowledge-based potentialsEvandro Ferrada, Francisco MeloCell Biochemistry and Biophysics|October 2, 2007
A knowledge-based potential with an accurate description of local interactions improves discrimination between native and near-native protein conformationsEvandro Ferrada, Ismael A Vergara, Francisco MeloBMC Bioinformatics|June 7, 2008
StAR: a simple tool for the statistical comparison of ROC curvesIsmael A Vergara, Tomás Norambuena, Evandro Ferrada, et al.Plos Computational Biology|December 5, 2014
The amino acid alphabet and the architecture of the protein sequence-structure map. I. Binary alphabetsEvandro FerradaJournal of Molecular Evolution|May 2, 2021
Quantifying the Mutational Robustness of Protein-Coding GenesEvandro FerradaGenome Biology and Evolution|November 30, 2018
The Site-Specific Amino Acid Preferences of Homologous Proteins Depend on Sequence DivergenceEvandro FerradaEvolutionary Bioinformatics Online|August 28, 2019
Gene Families, Epistasis and the Amino Acid Preferences of Protein HomologsEvandro FerradaBiophysical Journal|July 10, 2012
A comparison of genotype-phenotype maps for RNA and proteinsEvandro Ferrada, Andreas WagnerPlos One|December 15, 2010
Evolutionary innovations and the organization of protein functions in genotype spaceEvandro Ferrada, Andreas WagnerPageof 15