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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|July 23, 2021
Studying the History of Tumor Evolution from Single-Cell Sequencing Data by Exploring the Space of Binary MatricesSalem Malikić, Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, et al.
Cancer Research|May 29, 2021
A Transcriptionally Distinct Subpopulation of Healthy Acinar Cells Exhibit Features of Pancreatic Progenitors and PDACVishaka Gopalan, Arashdeep Singh, Farid Rashidi Mehrabadi, et al.
Genome Research|October 20, 2019
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing dataSalem Malikic, Farid Rashidi Mehrabadi, Simone Ciccolella, et al.
Biorxiv : the Preprint Server for Biology|May 7, 2024
Stochastic modelling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclonesM G Hirsch, Soumitra Pal, Farid Rashidi Mehrabadi, et al.
Cell Systems|December 19, 2024
Stochastic modeling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclonesM G Hirsch, Soumitra Pal, Farid Rashidi Mehrabadi, et al.
Nature Computational Science|January 4, 2024
Fast intratumor heterogeneity inference from single-cell sequencing dataCan Kızılkale, Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, et al.
Gut|May 9, 2025
Beneficial infections of the enterovirus genus in patients with liver cancerLichun Ma, Man Hsin Hung, Farid Rashidi Mehrabadi, et al.
Genome Research|June 14, 2023
Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression modelsYuelin Liu, Xuan Cindy Li, Farid Rashidi Mehrabadi, et al.
Bioinformatics (Oxford, England)|July 14, 2020
PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problemErfan Sadeqi Azer, Farid Rashidi Mehrabadi, Salem Malikić, et al.
Biorxiv : the Preprint Server for Biology|June 19, 2023
Melanoma clonal subline analysis uncovers heterogeneity-driven immunotherapy resistance mechanismsCharli Gruen, Howard H Yang, Antonella Sassano, et al.
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