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Fatemeh Almodaresi

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Bioinformatics (Oxford, England)|May 11, 2018
Grouper: graph-based clustering and annotation for improved de novo transcriptome analysisLaraib Malik, Fatemeh Almodaresi, Rob Patro
Bioinformatics (Oxford, England)|June 12, 2021
PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish indexFatemeh Almodaresi, Mohsen Zakeri, Rob Patro
Bioinformatics (Oxford, England)|September 9, 2017
Improved data-driven likelihood factorizations for transcript abundance estimationMohsen Zakeri, Avi Srivastava, Fatemeh Almodaresi, et al.
Bioinformatics (Oxford, England)|June 29, 2018
A space and time-efficient index for the compacted colored de Bruijn graphFatemeh Almodaresi, Hirak Sarkar, Avi Srivastava, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 17, 2020
An Efficient, Scalable, and Exact Representation of High-Dimensional Color Information Enabled Using de Bruijn Graph SearchFatemeh Almodaresi, Prashant Pandey, Michael Ferdman, et al.
Bioinformatics (Oxford, England)|March 24, 2022
An incrementally updatable and scalable system for large-scale sequence search using the Bentley-Saxe transformationFatemeh Almodaresi, Jamshed Khan, Sergey Madaminov, et al.
Cell Systems|June 25, 2018
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search IndexPrashant Pandey, Fatemeh Almodaresi, Michael A Bender, et al.
Genome Biology|February 1, 2022
AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suiteGiorgos Skoufos, Fatemeh Almodaresi, Mohsen Zakeri, et al.
Genome Biology|September 7, 2020
Alignment and mapping methodology influence transcript abundance estimationAvi Srivastava, Laraib Malik, Hirak Sarkar, et al.
Research Square|February 27, 2026
React-to-Me: A Conversational Interface for Interactive Exploration of the Reactome Pathway KnowledgebaseHelia Mohammadi, Fatemeh Almodaresi, Gregory F J Hogue, et al.
Pageof 2

Showing results (1-10 of 11) with videos related to

Sort By:
Pageof 2
Bioinformatics (Oxford, England)|May 11, 2018
Grouper: graph-based clustering and annotation for improved de novo transcriptome analysisLaraib Malik, Fatemeh Almodaresi, Rob Patro
Bioinformatics (Oxford, England)|June 12, 2021
PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish indexFatemeh Almodaresi, Mohsen Zakeri, Rob Patro
Bioinformatics (Oxford, England)|September 9, 2017
Improved data-driven likelihood factorizations for transcript abundance estimationMohsen Zakeri, Avi Srivastava, Fatemeh Almodaresi, et al.
Bioinformatics (Oxford, England)|June 29, 2018
A space and time-efficient index for the compacted colored de Bruijn graphFatemeh Almodaresi, Hirak Sarkar, Avi Srivastava, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 17, 2020
An Efficient, Scalable, and Exact Representation of High-Dimensional Color Information Enabled Using de Bruijn Graph SearchFatemeh Almodaresi, Prashant Pandey, Michael Ferdman, et al.
Bioinformatics (Oxford, England)|March 24, 2022
An incrementally updatable and scalable system for large-scale sequence search using the Bentley-Saxe transformationFatemeh Almodaresi, Jamshed Khan, Sergey Madaminov, et al.
Cell Systems|June 25, 2018
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search IndexPrashant Pandey, Fatemeh Almodaresi, Michael A Bender, et al.
Genome Biology|February 1, 2022
AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suiteGiorgos Skoufos, Fatemeh Almodaresi, Mohsen Zakeri, et al.
Genome Biology|September 7, 2020
Alignment and mapping methodology influence transcript abundance estimationAvi Srivastava, Laraib Malik, Hirak Sarkar, et al.
Research Square|February 27, 2026
React-to-Me: A Conversational Interface for Interactive Exploration of the Reactome Pathway KnowledgebaseHelia Mohammadi, Fatemeh Almodaresi, Gregory F J Hogue, et al.
Pageof 2