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Biorxiv : the Preprint Server for Biology|August 8, 2025
textToKnowledgeGraph: Generation of Molecular Interaction Knowledge Graphs Using Large Language Models for Exploration in CytoscapeFavour James, Christopher Churas, Dexter Pratt, et al.Bioinformatics (Oxford, England)|January 20, 2026
textToKnowledgeGraph: Generation of Molecular Interaction Knowledge Graphs Using Large Language Models for Exploration in CytoscapeFavour James, Dexter Pratt, Christopher Churas, et al.Biorxiv : the Preprint Server for Biology|June 27, 2020
Identifying persistent structures in multiscale 'omics dataFan Zheng, She Zhang, Christopher Churas, et al.Genome Biology|January 8, 2021
HiDeF: identifying persistent structures in multiscale 'omics dataFan Zheng, She Zhang, Christopher Churas, et al.Plos Computational Biology|October 23, 2020
Multiscale community detection in CytoscapeAkshat Singhal, Song Cao, Christopher Churas, et al.Current Protocols|September 27, 2021
NDEx: Accessing Network Models and Streamlining Network Biology WorkflowsRudolf T Pillich, Jing Chen, Christopher Churas, et al.Molecular Systems Biology|December 9, 2024
State of the interactomes: an evaluation of molecular networks for generating biological insightsSarah N Wright, Scott Colton, Leah V Schaffer, et al.Biorxiv : the Preprint Server for Biology|May 15, 2024
State of the Interactomes: an evaluation of molecular networks for generating biological insightsSarah N Wright, Scott Colton, Leah V Schaffer, et al.Bioinformatics (Oxford, England)|March 7, 2023
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data ExchangeRudolf T Pillich, Jing Chen, Christopher Churas, et al.Nature Protocols|January 18, 2023
Mapping the common gene networks that underlie related diseasesSara Brin Rosenthal, Sarah N Wright, Sophie Liu, et al.Pageof 13