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Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms|October 25, 2016
Genome wide features, distribution and correlations of NF-Y binding sitesFederico Zambelli, Giulio Pavesi
Methods in Molecular Biology (Clifton, N.J.)|January 12, 2015
RIP-Seq data analysis to determine RNA-protein associationsFederico Zambelli, Giulio Pavesi
Methods in Molecular Biology (Clifton, N.J.)|January 12, 2015
De novo secondary structure motif discovery using RNAProfileFederico Zambelli, Giulio Pavesi
Methods in Molecular Biology (Clifton, N.J.)|April 9, 2021
Using RNentropy to Detect Significant Variation in Gene Expression Across Multiple RNA-Seq or Single-Cell RNA-Seq SamplesFederico Zambelli, Giulio Pavesi
Briefings in Bioinformatics|April 21, 2012
Motif discovery and transcription factor binding sites before and after the next-generation sequencing eraFederico Zambelli, Graziano Pesole, Giulio Pavesi
Nucleic Acids Research|June 11, 2013
PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experimentsFederico Zambelli, Graziano Pesole, Giulio Pavesi
Nucleic Acids Research|June 3, 2009
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genesFederico Zambelli, Graziano Pesole, Giulio Pavesi
BMC Bioinformatics|February 9, 2007
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequencesGiulio Pavesi, Federico Zambelli, Graziano Pesole
Current Protocols in Bioinformatics|September 10, 2014
Using Weeder, Pscan, and PscanChIP for the Discovery of Enriched Transcription Factor Binding Site Motifs in Nucleotide SequencesFederico Zambelli, Graziano Pesole, Giulio Pavesi
Nucleic Acids Research|April 10, 2008
Exalign: a new method for comparative analysis of exon-intron gene structuresGiulio Pavesi, Federico Zambelli, Corrado Caggese, et al.
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