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BMC Bioinformatics|May 10, 2024
CAREx: context-aware read extension of paired-end sequencing dataFelix Kallenborn, Bertil Schmidt
BMC Bioinformatics|June 13, 2022
CARE 2.0: reducing false-positive sequencing error corrections using machine learningFelix Kallenborn, Julian Cascitti, Bertil Schmidt
Bioinformatics (Oxford, England)|August 21, 2020
CARE: context-aware sequencing read error correctionFelix Kallenborn, Andreas Hildebrandt, Bertil Schmidt
BMC Bioinformatics|November 3, 2024
CUDASW++4.0: ultra-fast GPU-based Smith-Waterman protein sequence database searchBertil Schmidt, Felix Kallenborn, Alejandro Chacon, et al.
BMC Bioinformatics|June 21, 2026
Accelign: a GPU-based library for accelerating pairwise sequence alignmentFelix Kallenborn, Fawaz Dabbaghie, Martin Steinegger, et al.
Bioinformatics Advances|October 13, 2025
RMapAlign3N: fast mapping of 3N-ReadsAndre Müller, Alexander Wichmann, Felix Kallenborn, et al.
IEEE Transactions on Computational Biology and Bioinformatics|January 23, 2026
gpuPairHMM: High-Speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUsBertil Schmidt, Felix Kallenborn, Alexander Wichmann, et al.
NAR Genomics and Bioinformatics|July 8, 2026
QutRNA2: robust tRNA modification discovery from Nanopore direct tRNA sequencingMichael Piechotta, Wei Guo, Isabel S Naarmann-de Vries, et al.
Nature Methods|September 19, 2025
GPU-accelerated homology search with MMseqs2Felix Kallenborn, Alejandro Chacon, Christian Hundt, et al.
Methods (San Diego, Calif.)|June 17, 2023
RabbitQCPlus 2.0: More efficient and versatile quality control for sequencing dataLifeng Yan, Zekun Yin, Hao Zhang, et al.
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