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BMC Bioinformatics|April 6, 2013
CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructionsYongchao Liu, Adrianto Wirawan, Bertil SchmidtPlos One|January 28, 2014
CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seedingYongchao Liu, Bernt Popp, Bertil SchmidtBMC Bioinformatics|August 27, 2011
Parallelized short read assembly of large genomes using de Bruijn graphsYongchao Liu, Bertil Schmidt, Douglas L MaskellBioinformatics (Oxford, England)|June 26, 2010
MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilitiesYongchao Liu, Bertil Schmidt, Douglas L MaskellBMC Bioinformatics|March 31, 2011
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPIYongchao Liu, Bertil Schmidt, Douglas L MaskellBioinformatics (Oxford, England)|May 12, 2012
CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transformYongchao Liu, Bertil Schmidt, Douglas L MaskellIEEE/ACM Transactions on Computational Biology and Bioinformatics|February 23, 2011
CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardwareWeiguo Liu, Bertil Schmidt, Wolfgang Müller-WittigBMC Research Notes|April 8, 2010
CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractionsYongchao Liu, Bertil Schmidt, Douglas L MaskellPlos One|January 6, 2016
Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC+Jorge González-Domínguez, Yongchao Liu, Bertil SchmidtBioinformatics (Oxford, England)|March 30, 2010
Multi-threaded vectorized distance matrix computation on the CELL/BE and x86/SSE2 architecturesAdrianto Wirawan, Chee Keong Kwoh, Bertil SchmidtPageof 9