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BMC Research Notes|May 7, 2009
CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing unitsYongchao Liu, Douglas L Maskell, Bertil Schmidt
BMC Bioinformatics|February 28, 2013
A hybrid short read mapping acceleratorYupeng Chen, Bertil Schmidt, Douglas L Maskell
Nucleic Acids Research|September 15, 2015
A computational method for studying the relation between alternative splicing and DNA methylationZejun Zheng, Xiaona Wei, Andreas Hildebrandt, et al.
BMC Systems Biology|August 5, 2016
SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutationsYongchao Liu, Martin Loewer, Srinivas Aluru, et al.
BMC Bioinformatics|July 3, 2020
RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq readsStefan Niebler, André Müller, Thomas Hankeln, et al.
BMC Bioinformatics|January 5, 2017
Accelerating metagenomic read classification on CUDA-enabled GPUsRobin Kobus, Christian Hundt, André Müller, et al.
BMC Bioinformatics|November 23, 2007
Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithmsMenaka Rajapakse, Bertil Schmidt, Lin Feng, et al.
BMC Research Notes|June 16, 2011
Parallel mutual information estimation for inferring gene regulatory networks on GPUsHaixiang Shi, Bertil Schmidt, Weiguo Liu, et al.
BMC Bioinformatics|March 20, 2008
Comparative phyloinformatics of virus genes at micro and macro levels in a distributed computing environmentDadabhai T Singh, Rahul Trehan, Bertil Schmidt, et al.
Bioinformatics (Oxford, England)|September 18, 2016
MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systemsJorge González-Domínguez, Yongchao Liu, Juan Touriño, et al.
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