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Plos Computational Biology|August 2, 2024
scaDA: A novel statistical method for differential analysis of single-cell chromatin accessibility sequencing dataFengdi Zhao, Xin Ma, Bing Yao, et al.
Biorxiv : the Preprint Server for Biology|February 8, 2024
scaDA: A Novel Statistical Method for Differential Analysis of Single-Cell Chromatin Accessibility Sequencing DataFengdi Zhao, Xin Ma, Bing Yao, et al.
Communications Biology|October 19, 2024
Identification of brain region-specific landscape and functions of clustered circRNAs in Alzheimer's disease using circMeta2Fengdi Zhao, Yangping Li, Li Chen, et al.
Computational and Structural Biotechnology Journal|February 9, 2023
Multi-task deep autoencoder to predict Alzheimer's disease progression using temporal DNA methylation data in peripheral bloodLi Chen, Andrew J Saykin, Bing Yao, et al.
Biorxiv : the Preprint Server for Biology|March 18, 2024
Deep5hmC: Predicting genome-wide 5-Hydroxymethylcytosine landscape via a multimodal deep learning modelXin Ma, Sai Ritesh Thela, Fengdi Zhao, et al.
Bioinformatics (Oxford, England)|August 28, 2024
Deep5hmC: predicting genome-wide 5-hydroxymethylcytosine landscape via a multimodal deep learning modelXin Ma, Sai Ritesh Thela, Fengdi Zhao, et al.
Bioinformatics (Oxford, England)|April 7, 2022
Exploiting deep transfer learning for the prediction of functional non-coding variants using genomic sequenceLi Chen, Ye Wang, Fengdi Zhao
Biorxiv : the Preprint Server for Biology|September 26, 2025
BayesCNet: Bayesian inference for cell type-specific regulatory networks leveraging cell type hierarchy in single-cell dataFengdi Zhao, Arkaprava Roy, Weijia Jin, et al.
Genome Research|June 3, 2026
Reference-informed spatial domain detection using weak supervision for spatial transcriptomicsXin Ma, Weijia Jin, Qing Lu, et al.
Biorxiv : the Preprint Server for Biology|September 26, 2025
Reference-Informed Spatial Domain Detection Using Weak Supervision for Spatial TranscriptomicsXin Ma, Weijia Jin, Qing Lu, et al.
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