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Bioinformatics (Oxford, England)|November 1, 2016
RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modificationsFerhat Alkan, Cesim Erten
Bioinformatics (Oxford, England)|March 20, 2015
SiPAN: simultaneous prediction and alignment of protein-protein interaction networksFerhat Alkan, Cesim Erten
Bioinformatics (Oxford, England)|December 17, 2013
BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networksFerhat Alkan, Cesim Erten
Bioinformatics (Oxford, England)|March 15, 2021
Ribo-ODDR: oligo design pipeline for experiment-specific rRNA depletion in Ribo-seqFerhat Alkan, Joana Silva, Eric Pintó Barberà, et al.
European Archives of Oto-Rhino-Laryngology : Official Journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : Affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery|May 28, 2026
Prevalence and risk factors of voice disorders among tour guides in CappadociaNamık Yücel Birol, Esra Yaşar Gündüz, Ferhat Alkan, et al.
Genome Biology|October 28, 2018
CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parametersFerhat Alkan, Anne Wenzel, Christian Anthon, et al.
Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences|March 6, 2025
High-throughput approaches for the identification of ribosome heterogeneityEdwin S Kyei-Baffour, Qi Chang Lin, Ferhat Alkan, et al.
European Archives of Oto-Rhino-Laryngology : Official Journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : Affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery|March 2, 2025
Is there any room for ChatGPT AI bot in speech-language pathology?Namık Yücel Birol, Hilal Berber Çiftci, Ayşegül Yılmaz, et al.
Nature Communications|May 31, 2022
CRISPR/Cas9 gRNA activity depends on free energy changes and on the target PAM contextGiulia I Corsi, Kunli Qu, Ferhat Alkan, et al.
NAR Genomics and Bioinformatics|May 9, 2025
Detecting ribosome collisions with differential rRNA fragment analysis in ribosome profiling dataEdwin Sakyi Kyei-Baffour, Jitske Bak, Joana Silva, et al.
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