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Applied and Environmental Microbiology|December 21, 2022
Benchmarking Bioinformatic Tools for Amplicon-Based Sequencing of NorovirusAmy H Fitzpatrick, Agnieszka Rupnik, Helen O'Shea, et al.
NPJ Science of Food|February 16, 2021
Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samplesAoife J McHugh, Min Yap, Fiona Crispie, et al.
Gut Microbes|September 13, 2018
The rumen microbiome: a crucial consideration when optimising milk and meat production and nitrogen utilisation efficiencyChloe Matthews, Fiona Crispie, Eva Lewis, et al.
Microbiome|March 21, 2018
Species classifier choice is a key consideration when analysing low-complexity food microbiome dataAaron M Walsh, Fiona Crispie, Orla O'Sullivan, et al.
International Journal for Parasitology|April 16, 2019
Removal of adult cyathostomins alters faecal microbiota and promotes an inflammatory phenotype in horsesNicola Walshe, Vivienne Duggan, Raul Cabrera-Rubio, et al.
Equine Veterinary Journal|September 13, 2020
Outbreak of acute larval cyathostominosis - A "perfect storm" of inflammation and dysbiosisNicola Walshe, Grace Mulcahy, Fiona Crispie, et al.
Microbiome|December 21, 2024
Shotgun metagenomic sequencing reveals the influence of artisanal dairy environments on the microbiomes, quality, and safety of Idiazabal, a raw ewe milk PDO cheeseGorka Santamarina-García, Min Yap, Fiona Crispie, et al.
FEMS Microbiology Reviews|February 1, 2023
Integrated molecular approaches for fermented food microbiome researchAaron M Walsh, John Leech, Curtis Huttenhower, et al.
Iscience|October 16, 2023
Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathwaysLiam H Walsh, Mairéad Coakley, Aaron M Walsh, et al.
International Journal of Molecular Sciences|April 13, 2024
Insights into the Adolescent Cystic Fibrosis Airway Microbiome Using Shotgun MetagenomicsGillian McDermott, Aaron Walsh, Fiona Crispie, et al.
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