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Nature Communications|March 22, 2018
uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteinsDaniel Maticzka, Ibrahim Avsar Ilik, Tugce Aktas, et al.Journal of Bioinformatics and Computational Biology|December 21, 2019
IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target predictionRick Gelhausen, Sebastian Will, Ivo L Hofacker, et al.Nucleic Acids Research|May 7, 2010
Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNACameron Smith, Steffen Heyne, Andreas S Richter, et al.Gigascience|January 29, 2021
ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome dataPavankumar Videm, Anup Kumar, Oleg Zharkov, et al.Nucleic Acids Research|September 13, 2024
SpacerPlacer: ancestral reconstruction of CRISPR arrays reveals the evolutionary dynamics of spacer deletionsAxel Fehrenbach, Alexander Mitrofanov, Omer S Alkhnbashi, et al.Methods (San Diego, Calif.)|July 22, 2019
CRISPR-Cas bioinformaticsOmer S Alkhnbashi, Tobias Meier, Alexander Mitrofanov, et al.Bioinformatics (Oxford, England)|January 20, 2009
CPSP-web-tools: a server for 3D lattice protein studiesMartin Mann, Cameron Smith, Mohamad Rabbath, et al.RNA Biology|March 16, 2017
sRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1Daniela Prasse, Konrad U Förstner, Dominik Jäger, et al.Gigascience|June 5, 2024
CheRRI-Accurate classification of the biological relevance of putative RNA-RNA interaction sitesTeresa Müller, Stefan Mautner, Pavankumar Videm, et al.Bioinformatics (Oxford, England)|November 20, 2010
PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequencesStefan E Seemann, Andreas S Richter, Tanja Gesell, et al.Pageof 27