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BMC Bioinformatics|November 19, 2008
Improved identification of conserved cassette exons using Bayesian networksRileen Sinha, Michael Hiller, Rainer Pudimat, et al.
Plos Computational Biology|April 17, 2007
Inferring noncoding RNA families and classes by means of genome-scale structure-based clusteringSebastian Will, Kristin Reiche, Ivo L Hofacker, et al.
Bioinformatics (Oxford, England)|July 14, 2020
The locality dilemma of Sankoff-like RNA alignmentsTeresa Müller, Milad Miladi, Frank Hutter, et al.
Plos One|February 27, 2013
CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 proteinIngeborg Scholz, Sita J Lange, Stephanie Hein, et al.
RNA (New York, N.Y.)|March 28, 2012
LocARNA-P: accurate boundary prediction and improved detection of structural RNAsSebastian Will, Tejal Joshi, Ivo L Hofacker, et al.
Nucleic Acids Research|July 19, 2013
CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systemsSita J Lange, Omer S Alkhnbashi, Dominic Rose, et al.
Bioinformatics (Oxford, England)|September 13, 2019
ShaKer: RNA SHAPE prediction using graph kernelStefan Mautner, Soheila Montaseri, Milad Miladi, et al.
Microlife|January 29, 2026
Comprehensive analysis of CRISPR array repeat mutations reveals subtype-specific patterns and links to spacer dynamicsAlexander Mitrofanov, Chase L Beisel, Franz Baumdicker, et al.
Bioinformatics (Oxford, England)|September 20, 2022
CRISPRtracrRNA: robust approach for CRISPR tracrRNA detectionAlexander Mitrofanov, Marcus Ziemann, Omer S Alkhnbashi, et al.
Nucleic Acids Research|August 11, 2012
Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludisHagen Richter, Judith Zoephel, Jeanette Schermuly, et al.
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