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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 10, 2010
Lifting prediction to alignment of RNA pseudoknotsMathias Möhl, Sebastian Will, Rolf Backofen
Microbiology Spectrum|April 21, 2018
Structure and Interaction Prediction in Prokaryotic RNA BiologyPatrick R Wright, Martin Mann, Rolf Backofen
Algorithms for Molecular Biology : AMB|January 6, 2010
Fast prediction of RNA-RNA interactionRaheleh Salari, Rolf Backofen, S Cenk Sahinalp
Nucleic Acids Research|October 7, 2008
Unifying evolutionary and thermodynamic information for RNA folding of multiple alignmentsStefan E Seemann, Jan Gorodkin, Rolf Backofen
Nucleic Acids Research|May 5, 2017
IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactionsMartin Mann, Patrick R Wright, Rolf Backofen
Bioinformatics (Oxford, England)|October 23, 2008
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regionsAnke Busch, Andreas S Richter, Rolf Backofen
BMC Genomics|December 18, 2020
Improving CLIP-seq data analysis by incorporating transcript informationMichael Uhl, Van Dinh Tran, Rolf Backofen
In Silico Biology|January 25, 2003
Protein similarity search under mRNA structural constraints: application to targeted selenocysteine insertionRolf Backofen, N S Narayanaswamy, Firas Swidan
Gigascience|October 10, 2024
Deepdefense: annotation of immune systems in prokaryotes using deep learningSven Hauns, Omer S Alkhnbashi, Rolf Backofen
Bioinformatics (Oxford, England)|June 13, 2012
GraphClust: alignment-free structural clustering of local RNA secondary structuresSteffen Heyne, Fabrizio Costa, Dominic Rose, et al.
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