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Algorithms for Molecular Biology : AMB|May 25, 2010
Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactionsStefan E Seemann, Andreas S Richter, Jan Gorodkin, et al.
Nucleic Acids Research|June 1, 2007
BioBayesNet: a web server for feature extraction and Bayesian network modeling of biological sequence dataSwetlana Nikolajewa, Rainer Pudimat, Michael Hiller, et al.
Bioinformatics (Oxford, England)|April 4, 2015
SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristicsSebastian Will, Christina Otto, Milad Miladi, et al.
Methods in Molecular Biology (Clifton, N.J.)|May 31, 2024
Comparative RNA GenomicsRolf Backofen, Jan Gorodkin, Ivo L Hofacker, et al.
Methods in Molecular Biology (Clifton, N.J.)|December 27, 2017
Comparative RNA GenomicsRolf Backofen, Jan Gorodkin, Ivo L Hofacker, et al.
BMC Bioinformatics|January 15, 2020
The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessmentMartin Raden, Teresa Müller, Stefan Mautner, et al.
Nucleic Acids Research|September 16, 2017
Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction dataJason A Davis, Sita J Saunders, Martin Mann, et al.
BMC Evolutionary Biology|March 28, 2008
Selection against tandem splice sites affecting structured protein regionsMichael Hiller, Karol Szafranski, Klaus Huse, et al.
Bioinformatics (Oxford, England)|June 28, 2024
Partial RNA designFrederic Runge, Jörg Franke, Daniel Fertmann, et al.
Plos One|May 22, 2013
Semi-supervised prediction of SH2-peptide interactions from imbalanced high-throughput dataKousik Kundu, Fabrizio Costa, Michael Huber, et al.
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