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BMC Bioinformatics|June 30, 2023
Comparing methods for drug-gene interaction prediction on the biomedical literature knowledge graph: performance versus explainabilityFotis Aisopos, Georgios Paliouras
BMC Medical Informatics and Decision Making|October 17, 2022
Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical recordsAkhilesh Vyas, Fotis Aisopos, Maria-Esther Vidal, et al.
Web Semantics (Online)|October 21, 2022
Knowledge4COVID-19: A semantic-based approach for constructing a COVID-19 related knowledge graph from various sources and analyzing treatments' toxicitiesAhmad Sakor, Samaneh Jozashoori, Emetis Niazmand, et al.
Journal of Chemical Information and Modeling|November 18, 2024
RankMHC: Learning to Rank Class-I Peptide-MHC Structural ModelsRomanos Fasoulis, Georgios Paliouras, Lydia E Kavraki
Emerging Topics in Life Sciences|October 19, 2021
Graph representation learning for structural proteomicsRomanos Fasoulis, Georgios Paliouras, Lydia E Kavraki
Plos Computational Biology|July 13, 2026
CPP2Vec: A representation learning approach for cell-penetrating peptides predictionStavroula Svolou, Vasileios Konstantakos, Anastasia Krithara, et al.
Nucleic Acids Research|March 29, 2022
CRISPR-Cas9 gRNA efficiency prediction: an overview of predictive tools and the role of deep learningVasileios Konstantakos, Anastasios Nentidis, Anastasia Krithara, et al.
Scientific Data|March 27, 2023
BioASQ-QA: A manually curated corpus for Biomedical Question AnsweringAnastasia Krithara, Anastasios Nentidis, Konstantinos Bougiatiotis, et al.
Nucleic Acids Research|June 7, 2022
CRISPRedict: a CRISPR-Cas9 web tool for interpretable efficiency predictionsVasileios Konstantakos, Anastasios Nentidis, Anastasia Krithara, et al.
Frontiers in Research Metrics and Analytics|October 16, 2023
The road from manual to automatic semantic indexing of biomedical literature: a 10 years journeyAnastasia Krithara, James G Mork, Anastasios Nentidis, et al.
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