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Annals of Epidemiology|May 12, 2019
Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination StudyFrancesco Beghini, Audrey Renson, Christine P Zolnik, et al.
NPJ Biofilms and Microbiomes|June 27, 2017
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasisAdrian Tett, Edoardo Pasolli, Stefania Farina, et al.
Nature Communications|May 20, 2020
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, et al.
Vaccines|November 27, 2021
Commensal Bifidobacterium Strains Enhance the Efficacy of Neo-Epitope Based Cancer VaccinesMichele Tomasi, Mattia Dalsass, Francesco Beghini, et al.
Elife|May 4, 2021
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3Francesco Beghini, Lauren J McIver, Aitor Blanco-Míguez, et al.
Nature Biotechnology|February 24, 2023
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4Aitor Blanco-Míguez, Francesco Beghini, Fabio Cumbo, et al.
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