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BMC Bioinformatics|February 6, 2025
Direct coupling analysis and the attention mechanismFrancesco Caredda, Andrea PagnaniPlos Computational Biology|February 19, 2026
Controllable protein design via autoregressive direct coupling analysis conditioned on principal componentsFrancesco Caredda, Lisa Gennai, Paolo De Los Rios, et al.Physical Review. E|May 18, 2023
Small-coupling expansion for multiple sequence alignmentLouise Budzynski, Andrea PagnaniBioinformatics (Oxford, England)|September 21, 2004
Predicting protein functions with message passing algorithmsMichele Leone, Andrea PagnaniPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|February 16, 2013
Multisurface coding simulations of the restricted solid-on-solid model in four dimensionsAndrea Pagnani, Giorgio ParisiPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|August 15, 2015
Numerical estimate of the Kardar-Parisi-Zhang universality class in (2+1) dimensionsAndrea Pagnani, Giorgio ParisiBioinformatics (Oxford, England)|August 30, 2023
DCAlign v1.0: aligning biological sequences using co-evolution models and informed priorsAnna Paola Muntoni, Andrea PagnaniPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|December 17, 2004
Threshold values, stability analysis, and high-q asymptotics for the coloring problem on random graphsFlorent Krzakała, Andrea Pagnani, Martin WeigtPlos One|July 11, 2013
Modelling Competing Endogenous RNA NetworksCarla Bosia, Andrea Pagnani, Riccardo ZecchinaBMC Bioinformatics|May 21, 2008
Estimating the size of the solution space of metabolic networksAlfredo Braunstein, Roberto Mulet, Andrea PagnaniPageof 6