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Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|May 15, 2002
Zero-temperature properties of RNA secondary structuresEnzo Marinari, Andrea Pagnani, Federico Ricci-TersenghiNature Communications|April 7, 2017
An analytic approximation of the feasible space of metabolic networksAlfredo Braunstein, Anna Paola Muntoni, Andrea PagnaniPhysical Review. E|May 19, 2021
Expectation propagation on the diluted Bayesian classifierAlfredo Braunstein, Thomas Gueudré, Andrea Pagnani, et al.Scientific Reports|December 4, 2019
A common root for coevolution and substitution rate variability in protein sequence evolutionFrancesca Rizzato, Stefano Zamuner, Andrea Pagnani, et al.Plos Computational Biology|April 14, 2016
Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody AffinityLorenzo Asti, Guido Uguzzoni, Paolo Marcatili, et al.Plos One|February 17, 2016
Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp OperonChristoph Feinauer, Hendrik Szurmant, Martin Weigt, et al.Methods in Molecular Biology (Clifton, N.J.)|October 5, 2019
Predicting Interacting Protein Pairs by Coevolutionary Paralog MatchingThomas Gueudré, Carlo Baldassi, Andrea Pagnani, et al.Molecular Biology and Evolution|June 22, 2010
A stochastic local search algorithm for distance-based phylogeny reconstructionFrancesca Tria, Emanuele Caglioti, Vittorio Loreto, et al.Molecular Biology and Evolution|March 26, 2025
Reconstruction of Ancestral Protein Sequences Using Autoregressive Generative ModelsMatteo De Leonardis, Andrea Pagnani, Pierre Barrat-CharlaixScientific Reports|March 8, 2017
ceRNA crosstalk stabilizes protein expression and affects the correlation pattern of interacting proteinsAraks Martirosyan, Andrea De Martino, Andrea Pagnani, et al.Pageof 6