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BMC Bioinformatics|July 1, 2010
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approachMarc Bailly-Bechet, Alfredo Braunstein, Andrea Pagnani, et al.International Journal of Molecular Sciences|October 23, 2021
AMaLa: Analysis of Directed Evolution Experiments via Annealed Mutational Approximated LandscapeLuca Sesta, Guido Uguzzoni, Jorge Fernandez-de-Cossio-Diaz, et al.Bioinformatics (Oxford, England)|July 3, 2023
Generating interacting protein sequences using domain-to-domain translationBarthelemy Meynard-Piganeau, Caterina Fabbri, Martin Weigt, et al.Journal of Molecular Graphics & Modelling|December 18, 2020
Solving the α-helix correspondence problem at medium-resolution Cryo-EM maps through modeling and 3D matchingBahareh Behkamal, Mahmoud Naghibzadeh, Andrea Pagnani, et al.Bioinformatics (Oxford, England)|May 13, 2022
LPTD: a novel linear programming-based topology determination method for cryo-EM mapsBahareh Behkamal, Mahmoud Naghibzadeh, Andrea Pagnani, et al.BMC Bioinformatics|July 3, 2024
Unsupervised modeling of mutational landscapes of adeno-associated viruses viabilityMatteo De Leonardis, Jorge Fernandez-de-Cossio-Diaz, Guido Uguzzoni, et al.Biophysical Journal|April 15, 2022
Relationship between fitness and heterogeneity in exponentially growing microbial populationsAnna Paola Muntoni, Alfredo Braunstein, Andrea Pagnani, et al.Journal of Proteomics|January 27, 2020
Clostridium cellulovorans metabolism of cellulose as studied by comparative proteomic approachGiulia Usai, Simona Cirrincione, Angela Re, et al.Plos One|March 26, 2014
Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partnersCarlo Baldassi, Marco Zamparo, Christoph Feinauer, et al.Physical Review. E|October 24, 2019
Nonconvex image reconstruction via expectation propagationAnna Paola Muntoni, Rafael Díaz Hernández Rojas, Alfredo Braunstein, et al.Pageof 6