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Physical Review Letters|February 1, 2008
Well-tempered metadynamics: a smoothly converging and tunable free-energy methodAlessandro Barducci, Giovanni Bussi, Michele ParrinelloNucleic Acids Research|December 23, 2017
A nucleobase-centered coarse-grained representation for structure prediction of RNA motifsSimón Poblete, Sandro Bottaro, Giovanni BussiThe Journal of Physical Chemistry Letters|January 25, 2024
Boosting Ensemble Refinement with Transferable Force-Field Corrections: Synergistic Optimization for Molecular SimulationsIvan Gilardoni, Thorben Fröhlking, Giovanni BussiProtein Science : a Publication of the Protein Society|May 13, 2021
Arginine multivalency stabilizes protein/RNA condensatesMatteo Paloni, Giovanni Bussi, Alessandro BarducciJournal of Chemical Theory and Computation|November 22, 2015
Metadynamics with Adaptive GaussiansDavide Branduardi, Giovanni Bussi, Michele ParrinelloPhysical Review Letters|March 5, 2009
Langevin equation with colored noise for constant-temperature molecular dynamics simulationsMichele Ceriotti, Giovanni Bussi, Michele ParrinelloPhysical Review Letters|August 8, 2009
Nuclear quantum effects in solids using a colored-noise thermostatMichele Ceriotti, Giovanni Bussi, Michele ParrinelloPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|October 13, 2007
Conjugate gradient heat bath for ill-conditioned actionsMichele Ceriotti, Giovanni Bussi, Michele ParrinelloJournal of Chemical Information and Modeling|March 18, 2025
Characterizing RNA Oligomers Using Stochastic Titration Constant-pH Metadynamics SimulationsTomás F D Silva, Giovanni BussiRNA (New York, N.Y.)|January 23, 2026
Machine Learning for RNA Secondary Structure Prediction: a review of current methods and challengesGiuseppe Sacco, Giovanni Bussi, Guido SanguinettiPageof 12