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The Journal of Chemical Physics|June 5, 2023
Simultaneous refinement of molecular dynamics ensembles and forward models using experimental dataThorben Fröhlking, Mattia Bernetti, Giovanni BussiPhysical Review Letters|April 12, 2006
Equilibrium free energies from nonequilibrium metadynamicsGiovanni Bussi, Alessandro Laio, Michele ParrinelloBiochemical and Biophysical Research Communications|December 18, 2017
Effects and limitations of a nucleobase-driven backmapping procedure for nucleic acids using steered molecular dynamicsSimón Poblete, Sandro Bottaro, Giovanni BussiJournal of Physics. Condensed Matter : an Institute of Physics Journal|August 5, 2011
Reactive force field simulation of proton diffusion in BaZrO3 using an empirical valence bond approachPaolo Raiteri, Julian D Gale, Giovanni BussiJournal of Chemical Theory and Computation|December 14, 2016
Combining Simulations and Solution Experiments as a Paradigm for RNA Force Field RefinementAndrea Cesari, Alejandro Gil-Ley, Giovanni BussiNucleic Acids Research|June 9, 2021
Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensemblesMattia Bernetti, Kathleen B Hall, Giovanni BussiThe Journal of Chemical Physics|February 26, 2009
Isothermal-isobaric molecular dynamics using stochastic velocity rescalingGiovanni Bussi, Tatyana Zykova-Timan, Michele ParrinelloJournal of Chemical Theory and Computation|May 7, 2016
Empirical Corrections to the Amber RNA Force Field with Target MetadynamicsAlejandro Gil-Ley, Sandro Bottaro, Giovanni BussiJournal of Chemical Information and Modeling|November 15, 2008
Mechanical features of Plasmodium falciparum acyl carrier protein in the delivery of substratesFrancesco Colizzi, Maurizio Recanatini, Andrea CavalliNucleic Acids Research|September 12, 2015
ATP dependent NS3 helicase interaction with RNA: insights from molecular simulationsAndrea Pérez-Villa, Maria Darvas, Giovanni BussiPageof 12