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Nucleic Acids Research|April 20, 2016
RNA folding pathways in stop motionSandro Bottaro, Alejandro Gil-Ley, Giovanni BussiNucleic Acids Research|October 31, 2014
The role of nucleobase interactions in RNA structure and dynamicsSandro Bottaro, Francesco Di Palma, Giovanni BussiJournal of the American Chemical Society|May 27, 2021
Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics SimulationsSandro Bottaro, Giovanni Bussi, Kresten Lindorff-LarsenBMC Bioinformatics|June 9, 2015
Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulationsFrancesco Di Palma, Sandro Bottaro, Giovanni BussiACS Central Science|August 29, 2022
Molecular Simulations Matching Denaturation Experiments for N<sup>6</sup>-MethyladenosineValerio Piomponi, Thorben Fröhlking, Mattia Bernetti, et al.The Journal of Chemical Physics|May 15, 2025
MDRefine: A Python package for refining molecular dynamics trajectories with experimental dataIvan Gilardoni, Valerio Piomponi, Thorben Fröhlking, et al.Physical Review Letters|June 1, 2004
Excitons in carbon nanotubes: an ab initio symmetry-based approachEric Chang, Giovanni Bussi, Alice Ruini, et al.The Journal of Chemical Physics|June 24, 2020
Toward empirical force fields that match experimental observablesThorben Fröhlking, Mattia Bernetti, Nicola Calonaci, et al.Journal of Chemical Information and Modeling|May 28, 2013
Structural role of uracil DNA glycosylase for the recognition of uracil in DNA duplexes. Clues from atomistic simulationsDuvan Franco, Jacopo Sgrignani, Giovanni Bussi, et al.The Journal of Physical Chemistry. B|September 6, 2024
Molecular Simulations to Investigate the Impact of N6-Methylation in RNA Recognition: Improving Accuracy and Precision of Binding Free Energy PredictionValerio Piomponi, Miroslav Krepl, Jiri Sponer, et al.Pageof 12