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Analytical Chemistry|September 24, 2020
Beyond Target-Decoy Competition: Stable Validation of Peptide and Protein Identifications in Mass Spectrometry-Based Discovery ProteomicsYohann Couté, Christophe Bruley, Thomas BurgerAnalytical Chemistry|April 16, 2026
Performance Is Not All You Need! Comment on "Unsupervised Machine Learning for Differential Analysis in Proteomics"Alicia Lionneton, Christophe Bruley, Thomas BurgerMethods in Molecular Biology (Clifton, N.J.)|October 29, 2022
Unveiling the Links Between Peptide Identification and Differential Analysis FDR Controls by Means of a Practical Introduction to Knockoff FiltersLucas Etourneau, Nelle Varoquaux, Thomas BurgerStudies in Health Technology and Informatics|September 7, 2017
The Role of Haptics in User Input for People with Motor and Cognitive ImpairmentsMirjam Augstein, Thomas Neumayr, Thomas BurgerBiostatistics (Oxford, England)|June 20, 2018
PEPA test: fast and powerful differential analysis from relative quantitative proteomics data using shared peptidesLaurent Jacob, Florence Combes, Thomas BurgerJournal of Proteomics|July 14, 2019
Five simple yet essential steps to correctly estimate the rate of false differentially abundant proteins in mass spectrometry analysesSamuel Wieczorek, Quentin Giai Gianetto, Thomas BurgerJournal of Proteome Research|November 6, 2018
Distinguishing between Spectral Clustering and Cluster Analysis of Mass SpectraHélène Borges, Romain Guibert, Olga Permiakova, et al.Methods in Molecular Biology (Clifton, N.J.)|March 11, 2019
Protein-Level Statistical Analysis of Quantitative Label-Free Proteomics Data with ProStaRSamuel Wieczorek, Florence Combes, Hélène Borges, et al.Proteomics|June 9, 2016
Uses and misuses of the fudge factor in quantitative discovery proteomicsQuentin Giai Gianetto, Yohann Couté, Christophe Bruley, et al.Biostatistics (Oxford, England)|March 22, 2025
Penalized likelihood optimization for censored missing value imputation in proteomicsLucas Etourneau, Laura Fancello, Samuel Wieczorek, et al.Pageof 4