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Biorxiv : the Preprint Server for Biology|April 25, 2024
Mondrian Abstraction and Language Model Embeddings for Differential Pathway AnalysisFuad Al Abir, Jake Y ChenAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|December 3, 2025
hERG-LTN: A New Paradigm for hERG Cardiotoxicity Prediction Using Neuro-Symbolic and Generative AIMd Delower Hossain, Fuad Al Abir, Jake Y ChenBiorxiv : the Preprint Server for Biology|July 10, 2026
MondrianMap: Navigating Gene Set Hierarchies with Multi-Resolution Enrichment MapsFuad Al Abir, Zongliang Yue, Ehsan Saghapour, et al.Molecular Omics|May 26, 2022
Biomarker identification by reversing the learning mechanism of an autoencoder and recursive feature eliminationFuad Al Abir, S M Shovan, Md Al Mehedi Hasan, et al.Sensors (Basel, Switzerland)|December 28, 2021
Deep Learning Based Air-Writing Recognition with the Choice of Proper Interpolation TechniqueFuad Al Abir, Md Al Siam, Abu Sayeed, et al.Bioorganic & Medicinal Chemistry Letters|April 12, 2026
Design, synthesis and evaluation of novel BRD4 and RIPK3 dual inhibitors as potential anti-inflammatory agents and antidotes for arsenicalsOmar Moukha-Chafiq, Marina Fosso Yatchang, Kaitlyn Houghtling, et al.SLAS Discovery : Advancing Life Sciences R & D|July 4, 2025
High-throughput screening for the identification of dual inhibitors of BRD4 and RIPK3 toward the development of small-molecule medical countermeasure agents against arsenicalsMarina Fosso Yatchang, Ling Zhai, Omar Moukha-Chafiq, et al.Personalized Medicine|June 26, 2010
Unraveling human complexity and disease with systems biology and personalized medicineStephen Naylor, Jake Y ChenArtificial Intelligence in Medicine|December 17, 2009
A GMM-IG framework for selecting genes as expression panel biomarkersMingyi Wang, Jake Y ChenMethods in Molecular Biology (Clifton, N.J.)|March 4, 2011
Data mining methods in Omics-based biomarker discoveryFan Zhang, Jake Y ChenPageof 11