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Briefings in Bioinformatics
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February 23, 2025
Do protein language models learn phylogeny?
Sanjana Tule, Gabriel Foley, Mikael Bodén
Cell Systems
|
November 18, 2025
Learning the language of phylogeny with MSA Transformer
Ruyi Chen, Gabriel Foley, Mikael Bodén
Bioinformatics (Oxford, England)
|
June 28, 2024
Optimal phylogenetic reconstruction of insertion and deletion events
Sanjana Tule, Gabriel Foley, Chongting Zhao, et al.
Methods in Molecular Biology (Clifton, N.J.)
|
November 23, 2021
Using the Evolutionary History of Proteins to Engineer Insertion-Deletion Mutants from Robust, Ancestral Templates Using Graphical Representation of Ancestral Sequence Predictions (GRASP)
Connie M Ross, Gabriel Foley, Mikael Boden, et al.
Biotechnology for Biofuels
|
June 7, 2019
The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases
Leander Sützl, Gabriel Foley, Elizabeth M J Gillam, et al.
Biotechniques
|
June 21, 2019
SeqScrub: a web tool for automatic cleaning and annotation of FASTA file headers for bioinformatic applications
Gabriel Foley, Leander Sützl, Stephlina A D'Cunha, et al.
Frontiers in Plant Science
|
December 24, 2016
Structure and Function of the TIR Domain from the Grape NLR Protein RPV1
Simon J Williams, Ling Yin, Gabriel Foley, et al.
FEBS Letters
|
March 19, 2026
A methionine-lined active site governs carbocation stabilization and product specificity in a bacterial terpene synthase
Marion Ringel, Carl P O Helmer, Shani Zev, et al.
Molecular Biology and Evolution
|
May 31, 2022
Ancestral Sequence Reconstruction of a Cytochrome P450 Family Involved in Chemical Defense Reveals the Functional Evolution of a Promiscuous, Xenobiotic-Metabolizing Enzyme in Vertebrates
Kurt L Harris, Raine E S Thomson, Yosephine Gumulya, et al.
The EMBO Journal
|
March 27, 2026
Thermostable ancestors enabled evolutionary diversification of promiscuous chemical defence enzymes
Raine E S Thomson, Yosephine Gumulya, Anthony W Bengochea, et al.
Page
of 2
Search research articles
Search
Showing results (1-10 of 14) with videos related to
Sort By:
Page
of 2
Briefings in Bioinformatics
|
February 23, 2025
Do protein language models learn phylogeny?
Sanjana Tule, Gabriel Foley, Mikael Bodén
Cell Systems
|
November 18, 2025
Learning the language of phylogeny with MSA Transformer
Ruyi Chen, Gabriel Foley, Mikael Bodén
Bioinformatics (Oxford, England)
|
June 28, 2024
Optimal phylogenetic reconstruction of insertion and deletion events
Sanjana Tule, Gabriel Foley, Chongting Zhao, et al.
Methods in Molecular Biology (Clifton, N.J.)
|
November 23, 2021
Using the Evolutionary History of Proteins to Engineer Insertion-Deletion Mutants from Robust, Ancestral Templates Using Graphical Representation of Ancestral Sequence Predictions (GRASP)
Connie M Ross, Gabriel Foley, Mikael Boden, et al.
Biotechnology for Biofuels
|
June 7, 2019
The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases
Leander Sützl, Gabriel Foley, Elizabeth M J Gillam, et al.
Biotechniques
|
June 21, 2019
SeqScrub: a web tool for automatic cleaning and annotation of FASTA file headers for bioinformatic applications
Gabriel Foley, Leander Sützl, Stephlina A D'Cunha, et al.
Frontiers in Plant Science
|
December 24, 2016
Structure and Function of the TIR Domain from the Grape NLR Protein RPV1
Simon J Williams, Ling Yin, Gabriel Foley, et al.
FEBS Letters
|
March 19, 2026
A methionine-lined active site governs carbocation stabilization and product specificity in a bacterial terpene synthase
Marion Ringel, Carl P O Helmer, Shani Zev, et al.
Molecular Biology and Evolution
|
May 31, 2022
Ancestral Sequence Reconstruction of a Cytochrome P450 Family Involved in Chemical Defense Reveals the Functional Evolution of a Promiscuous, Xenobiotic-Metabolizing Enzyme in Vertebrates
Kurt L Harris, Raine E S Thomson, Yosephine Gumulya, et al.
The EMBO Journal
|
March 27, 2026
Thermostable ancestors enabled evolutionary diversification of promiscuous chemical defence enzymes
Raine E S Thomson, Yosephine Gumulya, Anthony W Bengochea, et al.
Page
of 2