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Nature|July 19, 2023
Mega-scale experimental analysis of protein folding stability in biology and designKotaro Tsuboyama, Justas Dauparas, Jonathan Chen, et al.Scientific Reports|September 2, 2020
The influence of proline isomerization on potency and stability of anti-HIV antibody 10E8Miklos Guttman, Neal N Padte, Yaoxing Huang, et al.Plos Computational Biology|April 22, 2026
Using experimental results of protein design to guide biomolecular energy-function developmentHugh K Haddox, Gabriel J Rocklin, Francis C Motta, et al.Proceedings of the National Academy of Sciences of the United States of America|October 3, 2022
Dissecting the stability determinants of a challenging de novo protein fold using massively parallel design and experimentationTae-Eun Kim, Kotaro Tsuboyama, Scott Houliston, et al.Biorxiv : the Preprint Server for Biology|June 4, 2026
Accurate protein stability prediction for small domains using mega-scale experimentsYehlin Cho, Kotaro Tsuboyama, Theodore J Litberg, et al.Journal of Chemical Theory and Computation|December 22, 2021
Prediction and Validation of a Protein's Free Energy Surface Using Hydrogen Exchange and (Importantly) Its Denaturant DependenceXiangda Peng, Michael Baxa, Nabil Faruk, et al.Science (New York, N.Y.)|July 15, 2017
Global analysis of protein folding using massively parallel design, synthesis, and testingGabriel J Rocklin, Tamuka M Chidyausiku, Inna Goreshnik, et al.Proceedings of the National Academy of Sciences of the United States of America|July 17, 2021
Computational design of a synthetic PD-1 agonistCassie M Bryan, Gabriel J Rocklin, Matthew J Bick, et al.Biorxiv : the Preprint Server for Biology|April 8, 2025
Large-scale discovery, analysis, and design of protein energy landscapesÁllan J R Ferrari, Sugyan M Dixit, Jane Thibeault, et al.Nature|May 13, 2026
Large-scale discovery, analysis and design of protein energy landscapesÁllan J R Ferrari, Sugyan M Dixit, Jane Thibeault, et al.Pageof 3