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Bioinformatics (Oxford, England)|May 3, 2011
parmigene--a parallel R package for mutual information estimation and gene network reconstructionGabriele Sales, Chiara Romualdi
Bioinformatics (Oxford, England)|September 6, 2018
metaGraphite-a new layer of pathway annotation to get metabolite networksGabriele Sales, Enrica Calura, Chiara Romualdi
Bioinformatics (Oxford, England)|March 10, 2022
NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq dataFederico Agostinis, Chiara Romualdi, Gabriele Sales, et al.
Nucleic Acids Research|May 14, 2013
Graphite Web: Web tool for gene set analysis exploiting pathway topologyGabriele Sales, Enrica Calura, Paolo Martini, et al.
BMC Bioinformatics|February 2, 2012
graphite - a Bioconductor package to convert pathway topology to gene networkGabriele Sales, Enrica Calura, Duccio Cavalieri, et al.
Nucleic Acids Research|January 15, 2010
Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detectionGabriele Sales, Alessandro Coppe, Silvio Bicciato, et al.
Nucleic Acids Research|May 24, 2012
MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update)Andrea Bisognin, Gabriele Sales, Alessandro Coppe, et al.
Nucleic Acids Research|September 25, 2012
Along signal paths: an empirical gene set approach exploiting pathway topologyPaolo Martini, Gabriele Sales, M Sofia Massa, et al.
BMC Bioinformatics|April 13, 2011
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studiesPaolo Martini, Davide Risso, Gabriele Sales, et al.
Nucleic Acids Research|May 21, 2010
MAGIA, a web-based tool for miRNA and Genes Integrated AnalysisGabriele Sales, Alessandro Coppe, Andrea Bisognin, et al.
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