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Cell Reports. Physical Science|January 27, 2025
A variational graph-partitioning approach to modeling protein liquid-liquid phase separationGaoyuan Wang, Jonathan Warrell, Suchen Zheng, et al.Bioinformatics (Oxford, England)|September 4, 2024
Predicting spatially resolved gene expression via tissue morphology using adaptive spatial GNNsTianci Song, Eric Cosatto, Gaoyuan Wang, et al.Nature Communications|February 7, 2020
Estimating growth patterns and driver effects in tumor evolution from individual samplesLeonidas Salichos, William Meyerson, Jonathan Warrell, et al.Scientific Reports|May 25, 2023
Genetic determination of regional connectivity in modelling the spread of COVID-19 outbreak for more efficient mitigation strategiesLeonidas Salichos, Jonathan Warrell, Hannah Cevasco, et al.Clinical Cancer Research : an Official Journal of the American Association for Cancer Research|June 5, 2024
Spatially Informed Gene Signatures for Response to Immunotherapy in MelanomaThazin N Aung, Jonathan Warrell, Sandra Martinez-Morilla, et al.Journal of Theoretical Biology|November 22, 2016
Stability and structural properties of gene regulation networks with coregulation rulesJonathan Warrell, Musa MhlangaCell Systems|April 9, 2019
exceRpt: A Comprehensive Analytic Platform for Extracellular RNA ProfilingJoel Rozowsky, Robert R Kitchen, Jonathan J Park, et al.Iscience|April 22, 2024
Predicting A/B compartments from histone modifications using deep learningSuchen Zheng, Nitya Thakkar, Hannah L Harris, et al.Bioinformatics (Oxford, England)|January 15, 2011
AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excisionAlexej Abyzov, Mark GersteinBMC Bioinformatics|January 13, 2004
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structuresVadim Alexandrov, Mark GersteinPageof 47