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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|February 14, 2020
Incorporating Nearest-Neighbor Site Dependence into Protein Evolution ModelsGary Larson, Jeffrey L Thorne, Scott SchmidlerCurrent Opinion in Structural Biology|June 19, 2007
Protein evolution constraints and model-based techniques to study themJeffrey L ThornePlos Computational Biology|November 18, 2016
Drivers of Inter-individual Variation in Dengue Viral Load DynamicsRotem Ben-Shachar, Scott Schmidler, Katia KoelleJournal of Molecular Evolution|June 6, 2006
Testing for spatial clustering of amino acid replacements within protein tertiary structureJiaye Yu, Jeffrey L ThorneSystematic Biology|October 25, 2002
Divergence time and evolutionary rate estimation with multilocus dataJeffrey L Thorne, Hirohisa KishinoMolecular Biology and Evolution|May 25, 2006
Dependence among sites in RNA evolutionJiaye Yu, Jeffrey L ThorneSystematic Biology|January 9, 2018
Information Criteria for Comparing Partition SchemesTae-Kun Seo, Jeffrey L ThorneMolecular Biology and Evolution|May 7, 2026
Using drift coefficients as a basis for inferring times, effective population sizes, and genetic adaptationsReiichiro Nakamichi, Jeffrey L Thorne, Hirohisa KishinoGenes & Genetic Systems|October 9, 2003
Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolutionMasami Hasegawa, Jeffrey L Thorne, Hirohisa KishinoMolecular Biology and Evolution|June 15, 2016
A Phylogenetic Approach Finds Abundant Interlocus Gene Conversion in YeastXiang Ji, Alexander Griffing, Jeffrey L ThornePageof 7