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Nature Ecology & Evolution|January 4, 2024
Pseudogenes act as a neutral reference for detecting selection in prokaryotic pangenomesGavin M Douglas, B Jesse ShapiroGenome Biology and Evolution|October 19, 2021
Genic Selection Within Prokaryotic PangenomesGavin M Douglas, B Jesse ShapiroBioinformatics (Oxford, England)|December 15, 2022
Efficient computation of contributional diversity metrics from microbiome data with FuncDivGavin M Douglas, Sunu Kim, Morgan G I Langille, et al.Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases|May 12, 2026
Early-life acquisition of antimicrobial resistance genes and strain-level genomic concordance across maternal-infant compartmentsJean Marc Mardirossian, Bahia Abdallah, Gavin M Douglas, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
Co-occurrence is associated with horizontal gene transfer across marine bacteria independent of phylogenyGavin M Douglas, Nicolas Tromas, Marinna Gaudin, et al.The ISME Journal|December 11, 2025
Co-occurrence is associated with horizontal gene transfer across marine bacteria independent of phylogenyGavin M Douglas, Nicolas Tromas, Marinna Gaudin, et al.Advances in Experimental Medicine and Biology|November 27, 2013
Signatures of natural selection and ecological differentiation in microbial genomesB Jesse ShapiroMicrobiology Spectrum|January 3, 2024
Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in critical care patientsMira El Chaar, Yaralynn Khoury, Gavin M Douglas, et al.The ISME Journal|May 22, 2009
The slow:fast substitution ratio reveals changing patterns of natural selection in gamma-proteobacterial genomesB Jesse Shapiro, Eric AlmPageof 12