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Bioinformatics (Oxford, England)|July 19, 2022
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matchingTorbjørn Rognes, Lonneke Scheffer, Victor Greiff, et al.Bioinformatics (Oxford, England)|June 13, 2026
PEPE: Scalable extraction of multi-modal protein language model representationsJahn Zhong, Niccolò Cardente, Geir Kjetil Sandve, et al.Biorxiv : the Preprint Server for Biology|July 29, 2026
What Do Generative Models Learn About Adaptive Immune Receptor Repertoires? A Benchmark StudyCharlotte Würtzen, Maria Mamica, Chakravarthi Kanduri, et al.Biology Direct|April 8, 2006
A survey of motif discovery methods in an integrated frameworkGeir Kjetil Sandve, Finn DrabløsNature Computational Science|June 14, 2024
Linguistics-based formalization of the antibody language as a basis for antibody language modelsMai Ha Vu, Philippe A Robert, Rahmad Akbar, et al.Computational Systems Bioinformatics. Computational Systems Bioinformatics Conference|March 21, 2007
A methodology for motif discovery employing iterated cluster re-assignmentOsman Abul, Finn Drabløs, Geir Kjetil SandveBMC Bioinformatics|December 10, 2008
Compo: composite motif discovery using discrete modelsGeir Kjetil Sandve, Osman Abul, Finn DrabløsBioinformatics (Oxford, England)|October 15, 2011
Sequential Monte Carlo multiple testingGeir Kjetil Sandve, Egil Ferkingstad, Ståle NygårdGenome Biology|October 4, 2022
KAGE: fast alignment-free graph-based genotyping of SNPs and short indelsIvar Grytten, Knut Dagestad Rand, Geir Kjetil SandveGenome Biology|September 16, 2017
Genome build information is an essential part of genomic track filesChakravarthi Kanduri, Diana Domanska, Eivind Hovig, et al.Pageof 15