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Proteomics|March 26, 2019
RAId: Knowledge-Integrated Proteomics Web Service with Accurate Statistical Significance AssignmentAleksey Y Ogurtsov, Gelio Alves, Yi-Kuo YuPlos One|November 25, 2010
RAId_aPS: MS/MS analysis with multiple scoring functions and spectrum-specific statisticsGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|February 21, 2006
Score statistics of global sequence alignment from the energy distribution of a modified directed polymer and directed percolation problemMihaela E Sardiu, Gelio Alves, Yi-Kuo YuBMC Genomics|October 29, 2008
RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integrationGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuBiology Direct|October 27, 2007
RAId_DbS: peptide identification using database searches with realistic statisticsGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuJournal of the American Society for Mass Spectrometry|November 21, 2013
Molecular Isotopic Distribution Analysis (MIDAs) with adjustable mass accuracyGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuJournal of Proteome Research|July 18, 2025
Biological Function Assignment across Taxonomic Levels in Mass-Spectrometry-Based Metaproteomics via a Modified Expectation Maximization AlgorithmGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuJournal of Proteome Research|October 29, 2025
From Identification to Insight: Making Full Use of the Diagnostic Potential of MS/MS Proteotyping in Clinical Microbiology Using Efficient BioinformaticsThilo Muth, Roger Karlsson, Yi-Kuo Yu, et al.Journal of the American Society for Mass Spectrometry|January 15, 2026
Taxonomic-Level Protein Quantification in Metaproteomics Using a Biomass-Constrained Expectation-Maximization ApproachGelio Alves, Mehdi B Hamaneh, Aleksey Y Ogurtsov, et al.Journal of Proteome Research|June 19, 2008
Enhancing peptide identification confidence by combining search methodsGelio Alves, Wells W Wu, Guanghui Wang, et al.Pageof 9