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Current Opinion in Structural Biology|February 7, 2015
Structural and physico-chemical effects of disease and non-disease nsSNPs on proteinsTugba G Kucukkal, Marharyta Petukh, Lin Li, et al.Computational and Mathematical Methods in Medicine|May 12, 2012
Analyzing effects of naturally occurring missense mutationsZhe Zhang, Maria A Miteva, Lin Wang, et al.Journal of Chemical Theory and Computation|May 8, 2014
Predicting the Impact of Missense Mutations on Protein-Protein Binding AffinityMinghui Li, Marharyta Petukh, Emil Alexov, et al.Journal of Molecular Biology|January 16, 2007
Calculation of pKas in RNA: on the structural origins and functional roles of protonated nucleotidesChristopher L Tang, Emil Alexov, Anna Marie Pyle, et al.PMC Biophysics|April 9, 2009
On the electrostatic component of protein-protein binding free energyKemper Talley, Carmen Ng, Michael Shoppell, et al.Journal of Chemical Theory and Computation|January 20, 2018
Reproducing the Ensemble Average Polar Solvation Energy of a Protein from a Single Structure: Gaussian-Based Smooth Dielectric Function for Macromolecular ModelingArghya Chakravorty, Zhe Jia, Lin Li, et al.Scientific Reports|September 7, 2018
E-hooks provide guidance and a soft landing for the microtubule binding domain of dyneinNayere Tajielyato, Lin Li, Yunhui Peng, et al.Bioinformatics (Oxford, England)|November 2, 2017
Predicting protein-DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserverYunhui Peng, Lexuan Sun, Zhe Jia, et al.Journal of Chemical Information and Modeling|March 11, 2020
Capturing the Effects of Explicit Waters in Implicit Electrostatics Modeling: Qualitative Justification of Gaussian-Based Dielectric Models in DelPhiArghya Chakravorty, Shailesh Panday, Swagata Pahari, et al.Biophysical Journal|August 19, 2007
Optimization of electrostatic interactions in protein-protein complexesKelly Brock, Kemper Talley, Kacey Coley, et al.Pageof 138