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International Journal of Molecular Sciences|January 1, 2021
BION-2: Predicting Positions of Non-Specifically Bound Ions on Protein Surface by a Gaussian-Based Treatment of ElectrostaticsH B Mihiri Shashikala, Arghya Chakravorty, Shailesh Kumar Panday, et al.Bioinformatics (Oxford, England)|September 6, 2024
SAAMBE-MEM: a sequence-based method for predicting binding free energy change upon mutation in membrane protein-protein complexesPrawin Rimal, Shailesh Kumar Panday, Wang Xu, et al.Journal of Chemical Information and Modeling|May 20, 2025
<i>In Silico</i> Screening for Small Molecules to Alter Calpain Proteolysis through Modulating Conformation Changes Induced by HeterodimerizationPitambar Poudel, Ivan Shapovalov, Shailesh Kumar Panday, et al.Journal of Computational Chemistry|June 26, 2019
DelPhi Suite: New Developments and Review of FunctionalitiesChuan Li, Zhe Jia, Arghya Chakravorty, et al.Journal of Chemical Theory and Computation|November 16, 2020
Application and Comprehensive Analysis of Neighbor Approximated Information Theoretic Configurational Entropy Methods to Protein-Ligand Binding CasesShailesh Kumar Panday, Indira GhoshProteins|December 10, 2002
Role of the protein side-chain fluctuations on the strength of pair-wise electrostatic interactions: comparing experimental with computed pK(a)sEmil AlexovEuropean Journal of Biochemistry|December 23, 2003
Numerical calculations of the pH of maximal protein stability. The effect of the sequence composition and three-dimensional structureEmil AlexovBMC Bioinformatics|May 6, 2018
ProLego: tool for extracting and visualizing topological modules in protein structuresTaushif Khan, Shailesh Kumar Panday, Indira GhoshInternational Journal of Biological Macromolecules|September 14, 2007
Predicting interacting and interfacial residues using continuous sequence segmentsPetras Kundrotas, Emil AlexovPageof 138