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Patterns (New York, N.Y.)|August 21, 2023
Transcriptomic forecasting with neural ordinary differential equationsRossin Erbe, Genevieve Stein-O'Brien, Elana J Fertig
Methods in Molecular Biology (Clifton, N.J.)|November 16, 2013
Pattern identification in time-course gene expression data with the CoGAPS matrix factorizationElana J Fertig, Genevieve Stein-O'Brien, Andrew Jaffe, et al.
Bioinformatics (Oxford, England)|March 14, 2020
projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clusteringGaurav Sharma, Carlo Colantuoni, Loyal A Goff, et al.
Genome Biology|October 26, 2023
Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimatesShijie C Zheng, Genevieve Stein-O'Brien, Leandros Boukas, et al.
Biostatistics (Oxford, England)|March 31, 2022
Two-stage linked component analysis for joint decomposition of multiple biologically related data setsHuan Chen, Brian Caffo, Genevieve Stein-O'Brien, et al.
Biorxiv : the Preprint Server for Biology|July 15, 2024
Multi-sample non-negative spatial factorizationYi Wang, Kyla Woyshner, Chaichontat Sriworarat, et al.
Genome Biology|June 2, 2025
mNSF: multi-sample non-negative spatial factorizationYi Wang, Kyla Woyshner, Chaichontat Sriworarat, et al.
The Journal of Cell Biology|September 25, 2024
Claudin 7 suppresses invasion and metastasis through repression of a smooth muscle actin programJunior J West, Rosela Golloshi, Chae Yun Cho, et al.
Nature Neuroscience|November 3, 2015
Latent tri-lineage potential of adult hippocampal neural stem cells revealed by Nf1 inactivationGerald J Sun, Yi Zhou, Shiori Ito, et al.
Genome Biology|February 1, 2022
Universal prediction of cell-cycle position using transfer learningShijie C Zheng, Genevieve Stein-O'Brien, Jonathan J Augustin, et al.
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