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International Journal of Molecular Sciences
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May 14, 2022
Inverse Mixed-Solvent Molecular Dynamics for Visualization of the Residue Interaction Profile of Molecular Probes
Keisuke Yanagisawa, Ryunosuke Yoshino, Genki Kudo, et al.
Journal of Chemical Information and Modeling
|
December 12, 2023
AAp-MSMD: Amino Acid Preference Mapping on Protein-Protein Interaction Surfaces Using Mixed-Solvent Molecular Dynamics
Genki Kudo, Keisuke Yanagisawa, Ryunosuke Yoshino, et al.
Chemical & Pharmaceutical Bulletin
|
February 11, 2026
In Silico Analysis of the Binding Mode of Verteporfin, a YAP-TEAD Interaction Inhibitor
Yurika Ikegami, Genki Kudo, Takumi Hirao, et al.
Journal of Chemical Information and Modeling
|
May 20, 2024
Site Identification and Next Choice Protocol for Hit-to-Lead Optimization
Genki Kudo, Takumi Hirao, Ryunosuke Yoshino, et al.
Bioinformatics (Oxford, England)
|
April 22, 2023
Pocket to concavity: a tool for the refinement of protein-ligand binding site shape from alpha spheres
Genki Kudo, Takumi Hirao, Ryunosuke Yoshino, et al.
Journal of Computer-Aided Molecular Design
|
December 8, 2025
Molecular simulation-based 3D structural construction of olfactory receptor with agonist binding
Takumi Hirao, Yusuke Ihara, Chiori Ijichi, et al.
Journal of Chemical Information and Modeling
|
June 23, 2025
Construction of PROTAC-Mediated Ternary Complex Structure Distribution Profiles Using Extensive Conformational Search
Genki Kudo, Takumi Hirao, Ryuhei Harada, et al.
Scientific Reports
|
June 12, 2024
Prediction of the binding mechanism of a selective DNA methyltransferase 3A inhibitor by molecular simulation
Genki Kudo, Takumi Hirao, Ryuhei Harada, et al.
Journal of Chemical Information and Modeling
|
May 22, 2025
CrypToth: Cryptic Pocket Detection through Mixed-Solvent Molecular Dynamics Simulations-Based Topological Data Analysis
Jun Koseki, Chie Motono, Keisuke Yanagisawa, et al.
Chembiochem : a European Journal of Chemical Biology
|
June 12, 2026
In Silico Screening Using Freely Available Computational Tools to Generate Novel Peptide/Protein Pairs for Protein-Protein Ligation
Haruka Kawai, Daimei Miura, Genki Kudo, et al.
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Search research articles
Search
Showing results (1-10 of 16) with videos related to
Sort By:
Page
of 2
International Journal of Molecular Sciences
|
May 14, 2022
Inverse Mixed-Solvent Molecular Dynamics for Visualization of the Residue Interaction Profile of Molecular Probes
Keisuke Yanagisawa, Ryunosuke Yoshino, Genki Kudo, et al.
Journal of Chemical Information and Modeling
|
December 12, 2023
AAp-MSMD: Amino Acid Preference Mapping on Protein-Protein Interaction Surfaces Using Mixed-Solvent Molecular Dynamics
Genki Kudo, Keisuke Yanagisawa, Ryunosuke Yoshino, et al.
Chemical & Pharmaceutical Bulletin
|
February 11, 2026
In Silico Analysis of the Binding Mode of Verteporfin, a YAP-TEAD Interaction Inhibitor
Yurika Ikegami, Genki Kudo, Takumi Hirao, et al.
Journal of Chemical Information and Modeling
|
May 20, 2024
Site Identification and Next Choice Protocol for Hit-to-Lead Optimization
Genki Kudo, Takumi Hirao, Ryunosuke Yoshino, et al.
Bioinformatics (Oxford, England)
|
April 22, 2023
Pocket to concavity: a tool for the refinement of protein-ligand binding site shape from alpha spheres
Genki Kudo, Takumi Hirao, Ryunosuke Yoshino, et al.
Journal of Computer-Aided Molecular Design
|
December 8, 2025
Molecular simulation-based 3D structural construction of olfactory receptor with agonist binding
Takumi Hirao, Yusuke Ihara, Chiori Ijichi, et al.
Journal of Chemical Information and Modeling
|
June 23, 2025
Construction of PROTAC-Mediated Ternary Complex Structure Distribution Profiles Using Extensive Conformational Search
Genki Kudo, Takumi Hirao, Ryuhei Harada, et al.
Scientific Reports
|
June 12, 2024
Prediction of the binding mechanism of a selective DNA methyltransferase 3A inhibitor by molecular simulation
Genki Kudo, Takumi Hirao, Ryuhei Harada, et al.
Journal of Chemical Information and Modeling
|
May 22, 2025
CrypToth: Cryptic Pocket Detection through Mixed-Solvent Molecular Dynamics Simulations-Based Topological Data Analysis
Jun Koseki, Chie Motono, Keisuke Yanagisawa, et al.
Chembiochem : a European Journal of Chemical Biology
|
June 12, 2026
In Silico Screening Using Freely Available Computational Tools to Generate Novel Peptide/Protein Pairs for Protein-Protein Ligation
Haruka Kawai, Daimei Miura, Genki Kudo, et al.
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of 2