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BMC Genomics|October 14, 2024
Identifying transcription factors with cell-type specific DNA binding signaturesAseel Awdeh, Marcel Turcotte, Theodore J PerkinsPlos One|August 18, 2017
Uncovering robust patterns of microRNA co-expression across cancers using Bayesian Relevance NetworksParameswaran Ramachandran, Daniel Sánchez-Taltavull, Theodore J PerkinsEpigenetics & Chromatin|September 22, 2015
BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlatesParameswaran Ramachandran, Gareth A Palidwor, Theodore J PerkinsBioinformatics (Oxford, England)|April 8, 2015
Gene selection for the reconstruction of stem cell differentiation trees: a linear programming approachMohamed A Ghadie, Nathalie Japkowicz, Theodore J PerkinsBioinformatics (Oxford, England)|September 3, 2016
On cross-conditional and fluctuation correlations in competitive RNA networksDaniel Sánchez-Taltavull, Matthew MacLeod, Theodore J PerkinsProceedings of the National Academy of Sciences of the United States of America|April 11, 2007
Noisy information processing through transcriptional regulationEric Libby, Theodore J Perkins, Peter S SwainMethods in Molecular Biology (Clifton, N.J.)|November 18, 2022
Quantification of Muscle Satellite Stem Cell Divisions by High-Content AnalysisWilliam Chen, Theodore J Perkins, Michael A RudnickiFrontiers in Genetics|March 1, 2012
Methods for Determining the Statistical Significance of Enrichment or Depletion of Gene Ontology Classifications under Weighted MembershipErnesto Iacucci, Hans H Zingg, Theodore J PerkinsPlos One|November 5, 2010
A general model of codon bias due to GC mutational biasGareth A Palidwor, Theodore J Perkins, Xuhua XiaBioinformatics (Oxford, England)|March 3, 2019
RECAP reveals the true statistical significance of ChIP-seq peak callsJustin G Chitpin, Aseel Awdeh, Theodore J PerkinsPageof 9