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Plos One|August 16, 2020
Defining the nutritional input for genome-scale metabolic models: A roadmapGeorgios Marinos, Christoph Kaleta, Silvio WaschinaGenome Biology|March 11, 2021
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic modelsJohannes Zimmermann, Christoph Kaleta, Silvio WaschinaEvolution; International Journal of Organic Evolution|March 14, 2015
Plasticity and epistasis strongly affect bacterial fitness after losing multiple metabolic genesGlen D'Souza, Silvio Waschina, Christoph Kaleta, et al.The FEBS Journal|April 1, 2016
Metabolic network architecture and carbon source determine metabolite production costsSilvio Waschina, Glen D'Souza, Christian Kost, et al.Journal of Molecular Biology|July 2, 2019
Defining Division of Labor in Microbial CommunitiesSamir Giri, Silvio Waschina, Christoph Kaleta, et al.Msystems|December 3, 2025
Virtual Colon: spatiotemporal modeling of metabolic interactions in a computational colonic environmentGeorgios Marinos, Johannes Zimmermann, Jan Taubenheim, et al.Bioinformatics (Oxford, England)|October 8, 2014
Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructionsRalf Schmidt, Silvio Waschina, Daniela Boettger-Schmidt, et al.Evolution; International Journal of Organic Evolution|June 10, 2014
Less is more: selective advantages can explain the prevalent loss of biosynthetic genes in bacteriaGlen D'Souza, Silvio Waschina, Samay Pande, et al.Gut Microbes|July 3, 2026
Genome-scale metabolic models predict diet- and lifestyle-driven shifts of ecological interactions in the gut microbiomeGeorgios Marinos, Karlis Arturs Moors, Kristina Schlicht, et al.Nature Communications|December 31, 2024
Genome-scale metabolic modelling reveals interactions and key roles of symbiont clades in a sponge holobiontShan Zhang, Weizhi Song, Geogios Marinos, et al.Pageof 19