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Biorxiv : the Preprint Server for Biology|July 17, 2025
mRNABench: A curated benchmark for mature mRNA property and function predictionRuian Ian Shi, Taykhoom Dalal, Philip Fradkin, et al.Cell Stem Cell|March 29, 2008
Prediction and testing of novel transcriptional networks regulating embryonic stem cell self-renewal and commitmentEmily Walker, Minako Ohishi, Ryan E Davey, et al.Genome Research|July 25, 2020
Binding specificities of human RNA-binding proteins toward structured and linear RNA sequencesArttu Jolma, Jilin Zhang, Estefania Mondragón, et al.Genome Biology|January 8, 2014
Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding proteinLinan Chen, Jason G Dumelie, Xiao Li, et al.Genes & Development|September 13, 2023
Uncovering a mammalian neural-specific poly(A) binding protein with unique propertiesSahil Sharma, Sam Kajjo, Zineb Harra, et al.Biorxiv : the Preprint Server for Biology|June 4, 2026
Generalist large language models complement tailor-made predictors for tumor genomics interpretationJennifer Yu, Madison Darmofal, Michele Waters, et al.BMC Bioinformatics|April 21, 2004
Pegasys: software for executing and integrating analyses of biological sequencesSohrab P Shah, David Y M He, Jessica N Sawkins, et al.Cell Reports|November 4, 2015
The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene RegulationInga Loedige, Leonhard Jakob, Thomas Treiber, et al.Medrxiv : the Preprint Server for Health Sciences|September 21, 2023
Deep Learning Model for Tumor Type Prediction using Targeted Clinical Genomic Sequencing DataMadison Darmofal, Shalabh Suman, Gurnit Atwal, et al.Cancer Discovery|February 28, 2024
Deep-Learning Model for Tumor-Type Prediction Using Targeted Clinical Genomic Sequencing DataMadison Darmofal, Shalabh Suman, Gurnit Atwal, et al.Pageof 15