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Developmental Cell|September 6, 2005
Network news: functional modules revealed during early embryogenesis in C. elegansPeter J Roy, Quaid MorrisGenome Biology|August 16, 2019
scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq dataNelson Johansen, Gerald QuonNature Communications|November 15, 2024
scPair: Boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlasesHongru Hu, Gerald QuonGenome Biology|September 11, 2019
scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics dataRuoxin Li, Gerald QuonGenome Biology|November 23, 2019
Correction to: scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics dataRuoxin Li, Gerald QuonSTAR Protocols|September 21, 2022
Reconstructing cancer phylogenies using Pairtree, a clone tree reconstruction algorithmEthan Kulman, Jeff Wintersinger, Quaid MorrisPlos Computational Biology|January 8, 2025
Orchard: Building large cancer phylogenies using stochastic combinatorial searchEthan Kulman, Rui Kuang, Quaid MorrisPlos One|January 4, 2013
Labeling nodes using three degrees of propagationSara Mostafavi, Anna Goldenberg, Quaid MorrisJournal of the American Medical Informatics Association : JAMIA|September 1, 2022
PAN-cODE: COVID-19 forecasting using conditional latent ODEsRuian Shi, Haoran Zhang, Quaid MorrisMethods in Molecular Biology (Clifton, N.J.)|August 31, 2011
Predicting node characteristics from molecular networksSara Mostafavi, Anna Goldenberg, Quaid MorrisPageof 15